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Statistical backgrounds for genetics trainees

Popular Topics and Related Notebooks

Notations
Popular Topics in Statistical Genetics

Basic Genetics Concepts

Genotype Coding
Minor Allele Frequency
Hardy-Weinberg Equilibrium

Correlation Between Variants

Linkage Disequilibrium
Linkage Disequilibrium Score

Correlation Between Individuals

Genetic Relationship Matrix

Fixed Effects Models

Ordinary Least Squares
Odds Ratio
Marginal and Joint Effects
Summary Statistics

Random Effects Models

Proportion of Variance Explained and Heritability

Linear Mixed Model

Linear Mixed Model

Covariates

Confounder
Collider
Mediator

Meta-analysis

Meta-Analysis Fixed Effect
Meta-Analysis Random Effect

Likelihood

Likelihood
Maximum Likelihood Estimation
Likelihood Ratio
Expectation-Maximum Algorithm

Bayesian Versus Frequentist

Bayesian versus Frequentist
Bayes Rule
Bayes Factor
p-value and Bayesian Hypothesis Testing

Bayesian Regression Models

Bayesian Normal Mean Model
Bayesian Multivariate Normal Mean Model

Multiple Bayesian Models

Bayesian Model Comparison
Bayesian Mixture Model

Latent Structures in Data

Factor Analysis
Principal Component Analysis
Hidden Markov Model

Index

By Gao Wang and Rui Dong

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