fSuSiE credible band (fitted effect + uncertainty band)

For a functional-SuSiE (fsusieR::susiF) fine-mapping entry, returns the fitted effect curve and its credible band over the functional grid, one row per (credible set, grid position). Wraps the upstream fSuSiE band computation (fsusieR's internal update_cal_credible_band.susiF + get_fitted_effect). Uses saved bands in trimmed fits, or computes them from an untrimmed fit. Returns zero rows when the functional fields are absent.

Usage

fsusieCredibleBand(x, ...)

# S4 method for class 'FineMappingResultBase'
fsusieCredibleBand(x)

Arguments

x

A QtlFineMappingResult or GwasFineMappingResult.

...

Ignored.

Value

A long tibble: cs, chrom, pos, effect, lower, upper, halfwidth – halfwidth being (upper - lower) / 2, the symmetric band half-width publication tables carry (the collection method additionally carries the entry identity columns).

See also

fsusieTraitEffects, fsusieAffectedRegions

Examples

data(fsusieFineMappingExample)
fsusieCredibleBand(fsusieFineMappingExample)
#> # A tibble: 32 × 15
#>    study     context trait blockId method dataType dataSource standardized cs   
#>    <chr>     <chr>   <chr> <chr>   <chr>  <chr>    <chr>      <chr>        <chr>
#>  1 protocol… methyl… chr2… NA      fsusie NA       NA         NA           fsus…
#>  2 protocol… methyl… chr2… NA      fsusie NA       NA         NA           fsus…
#>  3 protocol… methyl… chr2… NA      fsusie NA       NA         NA           fsus…
#>  4 protocol… methyl… chr2… NA      fsusie NA       NA         NA           fsus…
#>  5 protocol… methyl… chr2… NA      fsusie NA       NA         NA           fsus…
#>  6 protocol… methyl… chr2… NA      fsusie NA       NA         NA           fsus…
#>  7 protocol… methyl… chr2… NA      fsusie NA       NA         NA           fsus…
#>  8 protocol… methyl… chr2… NA      fsusie NA       NA         NA           fsus…
#>  9 protocol… methyl… chr2… NA      fsusie NA       NA         NA           fsus…
#> 10 protocol… methyl… chr2… NA      fsusie NA       NA         NA           fsus…
#> # ℹ 22 more rows
#> # ℹ 6 more variables: chrom <chr>, pos <dbl>, effect <dbl>, lower <dbl>,
#> #   upper <dbl>, halfwidth <dbl>