Articles
Building input objects
Constructing the individual-level and summary-statistic S4 containers from manifests or by hand.
Quality Control
Allele alignment and LD-mismatch QC for GWAS and QTL summary statistics.
Fine-mapping
SuSiE-family fine-mapping for individual-level QTL data, QTL summary statistics, and GWAS summary statistics.
TWAS
Training TWAS weights from QTL data (individual-level and summary-statistics, single and multi-context) and computing per-gene TWAS Z-scores from GWAS summary statistics.
Colocalization
Pairwise QTL/GWAS colocalization (coloc.bf_bf) and multi-trait colocalization with ColocBoost.