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Per-Method Options for combinePValues

Source: R/pvalCombineWrappers.R
PvalMethodsParam.Rd

Bundle per-method engine options for combinePValues. Each entry is named for the method it configures and built with that method's constructor, so an option meant for one engine cannot silently reach another.

Usage

PvalMethodsParam(
  fisher = NULL,
  stouffer = NULL,
  invchisq = NULL,
  gbj = NULL,
  bj = NULL,
  hc = NULL,
  ghc = NULL,
  minp = NULL,
  gbj_omni = NULL,
  aspu = NULL
)

Arguments

fisher, stouffer, invchisq

Options for those poolr tests, built with PoolrOptions.

gbj, bj, hc, ghc, minp

Options for those GBJ tests, built with GbjOptions.

gbj_omni

Options for the GBJ omnibus test, built with GbjOmniOptions.

aspu

Options for aSPU, built with AspuOptions.

Value

A PvalMethodsParam object, a MethodParam, for combinePValues(methodArgs =). names() lists the methods that were configured.

Details

Each entry may be given as a plain named list instead, which is spliced into that method's constructor and so gets the same defaults and the same checking.

acat, hmp, bonferroni and gates are valid combinePValues methods but take no options, so they are not arguments here — naming one is an unused-argument error.

See also

combinePValues

Examples

PvalMethodsParam(aspu = AspuOptions(n.perm = 5000))
#> <PvalMethodsParam>
#>   methods                  aspu