Read and standardize GWAS summary statistics from file. Optionally uses MungeSumStats for format detection and QC.
Usage
readSumstats(
path,
trait_name = "trait",
genome = NULL,
n = NULL,
use_mungesumstats = TRUE,
...
)
# S4 method for class 'character'
readSumstats(
path,
trait_name = "trait",
genome = NULL,
n = NULL,
use_mungesumstats = TRUE,
...
)Arguments
- path
Character, path to the summary statistics file.
- trait_name
Character, name for the trait.
- genome
Character, genome build (e.g., "hg19", "hg38"). If NULL, inferred by MungeSumStats.
- n
Numeric, sample size (if not in the file).
- use_mungesumstats
Logical, whether to use MungeSumStats for standardization. Default TRUE if available.
- ...
Additional arguments.