Description of what the function does.
Usage
mr_format(
susie_result,
condition,
gwas_sumstats_db,
coverage = NULL,
run_allele_qc = TRUE,
method = "susie",
coverage_level = 0.95,
molecular_name_obj = c("susie_results", condition, "region_info", "region_name"),
ld_meta_df
)Arguments
- susie_result
A list containing the results of SuSiE analysis. This list should include nested elements such as 'susie_results', 'susie_result_trimmed', and 'top_loci', containing details about the statistical analysis of genetic variants.
- condition
A character string specifying the conditions. This is used to select the corresponding subset of results within 'susie_result'.
- gwas_sumstats_db
A data frame containing summary statistics from GWAS studies. It should include columns for variant id and their associated statistics such as beta coefficients and standard errors.
- coverage
A character string specifying the credible set column. If NULL, it is derived from
coverage_levelandmethod.- run_allele_qc
Whether to run allele QC on variants. Default TRUE.
- method
Fine-mapping method suffix used for method-specific columns.
- coverage_level
Numeric credible set coverage used when
coverageis NULL.