Load and Align Summary Statistics for a Given Gene and Condition
Source:R/mash_wrapper.R
load_multicontext_sumstats.RdThis function processes summary statistics matrices for a target gene across contexts, optionally aligning with a reference panel and updating an existing result list.
Usage
load_multicontext_sumstats(
dat_list,
signal_df,
cond,
region,
extract_infs = "z",
tag_patterns = NULL,
result_list_format
)Arguments
- dat_list
A named list of matrices or data.frames, each element corresponding to a summary statistics type (e.g., z, beta).
- signal_df
A data.frame containing signal information including `variant_ID`, `gene_ID`, and `event_ID`.
- cond
Character. Condition type: "strong", "null", or "random".
- region
Character. Target gene ID.
- extract_infs
Character vector. Names of summary statistics to extract (e.g., `"z"`, `"beta"`).
- tag_patterns
Optional named pattern list used to classify context.
- result_list_format
A nested list used as a running result container.