Filter variants by LD Reference
Usage
filter_variants_by_ld_reference(
variant_ids,
ld_reference_meta_file,
keep_indel = TRUE
)
Arguments
- variant_ids
variant names in the format chr:pos_ref_alt or chr:pos:ref:alt.
- ld_reference_meta_file
A data frame similar to 'genomic_data' in get_regional_ld_meta function.
Value
A subset of variants, filtered based on LD reference data.