Compute SuSiE-ASH TWAS weights — susieAshWeights • pecotmr

Extracts coefficients from an existing SuSiE-ASH fit or fits `susieR::susie()` with `unmappable_effects = "ash"`.

Usage

susieAshWeights(X = NULL, y = NULL, susieAshFit = NULL, retainFit = FALSE, ...)

Arguments

X: Genotype matrix. Required when `susieAshFit` is NULL.
y: Phenotype vector. Required when `susieAshFit` is NULL.
susieAshFit: Optional fitted SuSiE-ASH object.
retainFit: If TRUE, stores the fitted object as an attribute on the returned weights.
...: Additional arguments passed to `susieR::susie()` when fitting.

Value

Numeric vector of variant weights.