Read genomic annotations from files (BED, BigWig, S-LDSC .annot format, or GRanges objects) and create an AnnotationMatrix.
Usage
readAnnotations(paths, snpRanges, annotationMeta = NULL, genome = "hg19", ...)
# S4 method for class 'character'
readAnnotations(paths, snpRanges, annotationMeta = NULL, genome = "hg19", ...)Arguments
- paths
Named character vector of file paths, or a named list of GRanges objects. Names become annotation names.
- snpRanges
A
GRangesobject defining SNP positions.- annotationMeta
A
data.framewith annotation metadata (name, tier, type). If NULL, auto-detected from file format.- genome
Character, genome build.
- ...
Additional arguments.