Example QTL Fine-Mapping Results (SuSiE)

SuSiE fine-mapping results for de-identified eQTL individual-level data. Stored as a nested list matching the format expected by xqtl_enrichment_wrapper. All variant identifiers and region/context names are synthetic.

Format

A nested list with structure [[region]][[context]], where each context contains:

susie_result_trimmed

List. Trimmed SuSiE result with elements alpha, pip, V, and sets. (Legacy key; new code should use the FineMappingResult S4 object.)

variantNames

Character vector (length 2,828). Synthetic variant identifiers matching the variant names in the SuSiE result. (Legacy key; new code should use the FineMappingResult S4 object.)

Examples

data(qtl_finemapping_example)
names(qtl_finemapping_example)
#> [1] "region_1"
names(qtl_finemapping_example[["region_1"]][["context_1"]])
#> [1] "susie_result_trimmed" "variant_names"