Feature score from the fraction of significant deviation contrasts

For each condition's deviation contrast, the proportion of variants whose contrast p-value falls below pCutoff – the "n-significant" feature score of mash_posterior.ipynb. No meta-analysis is involved.

Usage

nSignificantScore(contrastResult, pCutoff = 1e-05)

Arguments

contrastResult

A contrast table from mashPosteriorContrast carrying p_contrast_*_deviation columns.

pCutoff

Significance threshold (default 1e-5).

Value

A data.frame with condition and ratio (\(n_{sig} / n\)).