Example GWAS Fine-Mapping Results (SuSiE)

SuSiE RSS fine-mapping results for de-identified GWAS summary statistics. Suitable for use with xqtl_enrichment_wrapper and compute_qtl_enrichment. All variant identifiers are synthetic.

Format

A list of length 1, where the first element is a trimmed SuSiE result list containing:

alpha

Numeric matrix (L x p). Single-effect assignment probabilities.

pip

Named numeric vector (length 2,828). Posterior inclusion probabilities with synthetic variant names.

V

Numeric vector. Estimated prior variances for each single effect.

sets

List. Credible set information from SuSiE.

Examples

data(gwas_finemapping_example)
length(gwas_finemapping_example[[1]]$pip)
#> [1] 2828