Get Variant GRanges

Return the variant metadata GRanges of an LdData.

Usage

getVariantInfo(x)

# S4 method for class 'LdData'
getVariantInfo(x)

Arguments

x

An LdData.

Value

A GRanges.

Examples

data(eqtlRegionExample)
X <- eqtlRegionExample$X[, 1:8]
gr <- GenomicRanges::GRanges("22",
  IRanges::IRanges(seq(1L, by = 100L, length.out = 8), width = 1L))
ld <- LdData(correlation = cor(X), variants = gr,
  blockMetadata = S4Vectors::DataFrame(
    chrom = "22", start = 1L, end = 1000L))
getVariantInfo(ld)
#> GRanges object with 8 ranges and 0 metadata columns:
#>       seqnames    ranges strand
#>          <Rle> <IRanges>  <Rle>
#>   [1]       22         1      *
#>   [2]       22       101      *
#>   [3]       22       201      *
#>   [4]       22       301      *
#>   [5]       22       401      *
#>   [6]       22       501      *
#>   [7]       22       601      *
#>   [8]       22       701      *
#>   -------
#>   seqinfo: 1 sequence from an unspecified genome; no seqlengths