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Find which target regions overlap a query region

Usage

findOverlappingRegions(query, targets)

Arguments

query

A single region string or single-row data.frame with chrom/start/end columns.

targets

A character vector of region strings, or a multi-row data.frame with chrom/start/end columns.

Value

Integer vector of 1-based indices into targets that overlap the query. Empty integer vector if no overlaps.