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Compute LD Scores

Source: R/AllGenerics.R, R/h2_estimate_wrappers.R
computeLdScores.Rd

Compute LD scores from an LD reference, optionally stratified by annotations.

Usage

computeLdScores(ld_ref, annotations = NULL, ...)

# S4 method for class 'LDEigen'
computeLdScores(ld_ref, annotations = NULL, ...)

# S4 method for class 'LDScore'
computeLdScores(ld_ref, annotations = NULL, ...)

Arguments

ld_ref

An LDStatistic object.

annotations

An AnnotationMatrix object, or NULL.

...

Additional arguments.

Value

A numeric matrix of LD scores (SNPs x annotations+1).