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Compute LD Scores

Source: R/AllGenerics.R, R/h2EstimationWrappers.R
computeLdScores.Rd

Compute LD scores from an LD reference, optionally stratified by annotations.

Usage

computeLdScores(ldRef, annotations = NULL, ...)

# S4 method for class 'LdEigen'
computeLdScores(ldRef, annotations = NULL, ...)

# S4 method for class 'LdScore'
computeLdScores(ldRef, annotations = NULL, ...)

Arguments

ldRef

An LdStatistic object.

annotations

An AnnotationMatrix object, or NULL.

...

Additional arguments.

Value

A numeric matrix of LD scores (SNPs x annotations+1).