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The virtual base of FineMappingMethodsParam and TwasWeightsMethodsParam: which methods a pipeline runs, and each one's engine arguments.

Three slots rather than one because a method running on both data paths reaches a different engine on each — lasso is glmnet on individual-level data and lassosum on summary statistics — so one bag of arguments per method cannot serve a MultiStudyQtlDataset carrying both. methods holds entries whose input path need not be stated; qtlDatasetMethods and qtlSumStatsMethods hold the ones that must state it. Naming a method selects it.

Slots

methods

Named list of per-method options whose input path need not be stated.

qtlDatasetMethods

Named list of per-method options for the individual-level path.

qtlSumStatsMethods

Named list of per-method options for the summary-statistics path.