https://statfungen.github.io/xqtl-resources/xqtl-data/qtl/metaQTL/Recent content in Metabolome QTL (metaQTL) Resources on FunGen-AD ResourcesHugoen-ushttps://statfungen.github.io/xqtl-resources/xqtl-data/qtl/metaQTL/EFIGA_plasma_metabolomics_qtl/Mon, 01 Jan 0001 00:00:00 +0000https://statfungen.github.io/xqtl-resources/xqtl-data/qtl/metaQTL/EFIGA_plasma_metabolomics_qtl/<h1 id="efiga-plasma-metabolomics-qtl">EFIGA plasma metabolomics QTL<a class="anchor" href="#efiga-plasma-metabolomics-qtl">#</a></h1> <h2 id="contact">Contact<a class="anchor" href="#contact">#</a></h2> <p>Zining Qi</p>https://statfungen.github.io/xqtl-resources/xqtl-data/qtl/metaQTL/Knight_ADRC_brain_metabolomics_qtl/Mon, 01 Jan 0001 00:00:00 +0000https://statfungen.github.io/xqtl-resources/xqtl-data/qtl/metaQTL/Knight_ADRC_brain_metabolomics_qtl/<h1 id="knight-adrc-brain-metabolomics-qtl">Knight ADRC brain metabolomics QTL<a class="anchor" href="#knight-adrc-brain-metabolomics-qtl">#</a></h1> <h2 id="contact">Contact<a class="anchor" href="#contact">#</a></h2> <p>Zining Qi</p>https://statfungen.github.io/xqtl-resources/xqtl-data/qtl/metaQTL/Knight_ADRC_CSF_metabolomics_qtl/Mon, 01 Jan 0001 00:00:00 +0000https://statfungen.github.io/xqtl-resources/xqtl-data/qtl/metaQTL/Knight_ADRC_CSF_metabolomics_qtl/<h1 id="knight-adrc-csf-metabolomics-qtl">Knight ADRC CSF metabolomics QTL<a class="anchor" href="#knight-adrc-csf-metabolomics-qtl">#</a></h1> <h2 id="contact">Contact<a class="anchor" href="#contact">#</a></h2> <p>Zining Qi</p>https://statfungen.github.io/xqtl-resources/xqtl-data/qtl/metaQTL/ROSMAP_DLPFC_metabolomics_qtl/Mon, 01 Jan 0001 00:00:00 +0000https://statfungen.github.io/xqtl-resources/xqtl-data/qtl/metaQTL/ROSMAP_DLPFC_metabolomics_qtl/<h1 id="rosmap-dlpfc-brain-metabolomics-qtl">ROSMAP DLPFC Brain Metabolomics QTL<a class="anchor" href="#rosmap-dlpfc-brain-metabolomics-qtl">#</a></h1> <p>Religious Orders Study (ROS) or the Rush Memory and Aging Project (MAP) brain tissue metabolomics QTL analysis.</p> <p>Please refer to <a href="https://statfungen.github.io/xqtl-resources/xqtl-data/study_info/ROSMAP/">this document</a> for an overview of the ROSMAP project.</p> <h2 id="contact">Contact<a class="anchor" href="#contact">#</a></h2> <p>FunGen-xQTL Analysis Team</p> <h2 id="study-overview">Study Overview<a class="anchor" href="#study-overview">#</a></h2> <ul> <li>Study name: ROSMAP DLPFC brain metabolomics QTL (metaQTL)</li> <li>Study Description: Metabolite quantitative trait loci (metaQTL) analysis using 600 metabolites measured in DLPFC brain tissue from ROSMAP donors. Metabolomics data were profiled using untargeted mass spectrometry.</li> <li>Tissue: Dorsolateral prefrontal cortex (DLPFC)</li> <li>Metabolites: ~600 metabolites (untargeted mass spectrometry)</li> <li>Cohort: ROSMAP</li> </ul> <h2 id="analysis-details">Analysis Details<a class="anchor" href="#analysis-details">#</a></h2> <h3 id="paths-to-cis-qtl-association-testing">Path(s) to cis-QTL association testing<a class="anchor" href="#paths-to-cis-qtl-association-testing">#</a></h3> <ul> <li><code>s3://statfungen/ftp_fgc_xqtl/analysis_result/cis_association/ROSMAP/metaQTL/DLPFC/</code></li> </ul> <h3 id="paths-to-fine-mapping-with-susie-rss-model">Path(s) to fine-mapping with SuSiE RSS model<a class="anchor" href="#paths-to-fine-mapping-with-susie-rss-model">#</a></h3> <p>Fine-mapping model objects (SuSiE-RSS, <code>.rds</code>) are available in the <a href="https://www.synapse.org/Synapse:syn69670592">finemapping models folder (syn69670592)</a>.</p>https://statfungen.github.io/xqtl-resources/xqtl-data/qtl/metaQTL/WHICAP_plasma_metabolomics_qtl/Mon, 01 Jan 0001 00:00:00 +0000https://statfungen.github.io/xqtl-resources/xqtl-data/qtl/metaQTL/WHICAP_plasma_metabolomics_qtl/<h1 id="whicap-pilot-plasma-metabolomics-qtl">WHICAP (pilot) plasma metabolomics QTL<a class="anchor" href="#whicap-pilot-plasma-metabolomics-qtl">#</a></h1> <h2 id="contact">Contact<a class="anchor" href="#contact">#</a></h2> <p>Zining Qi</p>