https://statfungen.github.io/xqtl-resources/xqtl-data/omics/covariates/Recent content in Covariate Data on FunGen-AD ResourcesHugoen-ushttps://statfungen.github.io/xqtl-resources/xqtl-data/omics/covariates/ROSMAP_covariates/Mon, 01 Jan 0001 00:00:00 +0000https://statfungen.github.io/xqtl-resources/xqtl-data/omics/covariates/ROSMAP_covariates/<h1 id="rosmap-covariates-data">ROSMAP Covariates data<a class="anchor" href="#rosmap-covariates-data">#</a></h1> <p>Religious Orders Study (ROS) or the Rush Memory and Aging Project (MAP) covariates data</p> <h2 id="data-descriptions">Data Descriptions<a class="anchor" href="#data-descriptions">#</a></h2> <p>There are couple of versions of covariates files been used for QTL calling, which may lead to inconsistency of data production and downstream integration analysis.</p> <p>The following are the files that haven been used:</p> <ol> <li>For pQTL: FTP: <code>/ftp_fgc_xqtl/ref-data/ROSMAP_covariates/dataset_707_basic_02-08-2022.clean.txt</code>(CU: <code>/mnt/mfs/ctcn/datasets/rosmap/phenotypes/2022Feb08/dataset_707_basic_02-08-2022.clean.txt</code>)</li> </ol> <p>This should be the complete covariates file, which have 3000+ samples and more covariates, other than sex, death and pmi, than we need for our QTL calling. To accomendate our QTL pipeline, formatting and processing is needed before using.</p>