FunGen-xQTL Resources

Dataset inventory

This inventory lists the omics datasets in the current release and the new or expanded datasets being curated for the next phase of the atlas.
37 In handObtained and on the AD Knowledge Portal or DSS. Release status is shown on each dataset page.
0 ReviewingLocated; checking fit and QC
0 RequestedOutreach under way
1 To identifyCandidates not yet found
DatasetCohortContextModalityNAccessAcquisitionPhaseSource
Knight ADRC brain gene expressionKnight-ADRCparietal cortexExpression—ControlledIn handAtlas v1syn69670592
Knight ADRC brain metabolomicsKnight-ADRCparietal cortexMetabolomics—ControlledIn handAtlas v1
Knight ADRC brain methylationKnight-ADRCparietal cortexMethylation—ControlledIn handAtlas v1syn69670592
Knight ADRC brain proteomicsKnight-ADRCparietal cortexProteomics442ControlledIn handAtlas v1syn69670592
Knight ADRC brain splicingKnight-ADRCparietal cortexSplicing—ControlledIn handAtlas v1syn69670592
Knight ADRC genotype dataKnight-ADRCbloodGenotype / WGS—ControlledIn handAtlas v1
MetaBrain Brain ExpressionMetaBrain5 brain regionsExpression——In handAtlas v1syn69670592
MiGA genotype dataMiGAGenotype / WGS—ControlledIn handAtlas v1
MiGA multi-brain region gene expressionMiGAmicroglia, 4 regionsExpression—ControlledIn handAtlas v1syn69670592
MSBB brain alternative splicingMSBB4 brain regionsSplicing—ControlledIn handAtlas v1syn69670592
MSBB brain gene expressionMSBB4 brain regionsExpression—ControlledIn handAtlas v1syn69670592
MSBB brain methylationMSBBbrainMethylation—ControlledIn handAtlas v1syn69670592
MSBB brain proteomicsMSBBbrainProteomics—ControlledIn handAtlas v1syn69670592
MSBB WGS dataMSBBbloodGenotype / WGS—ControlledIn handAtlas v1
ROSMAP AC alternative splicingROSMAPACSplicing—ControlledIn handAtlas v1syn3388564
ROSMAP AC gene expressionROSMAPACExpression—ControlledIn handAtlas v1syn3388564
ROSMAP CUIMC1 snRNA-seq expressionROSMAPDLPFCsnRNA-seq424ControlledIn handAtlas v1syn31512863
ROSMAP DLPFC alternative splicingROSMAPDLPFCSplicing1,141ControlledIn handAtlas v1syn3388564
ROSMAP DLPFC gene expressionROSMAPDLPFCExpression—ControlledIn handAtlas v1syn3388564
ROSMAP DLPFC GlycoproteomicsROSMAPDLPFCGlycoproteomics—ControlledIn handAtlas v1syn17015098
ROSMAP DLPFC H3K9acROSMAPDLPFCHistone ChIP-seq669ControlledIn handAtlas v1syn4896408
ROSMAP DLPFC MetabolomicsROSMAPDLPFCMetabolomics—ControlledIn handAtlas v1syn69670592
ROSMAP DLPFC methylationROSMAPDLPFCMethylation—ControlledIn handAtlas v1syn3157275
ROSMAP DLPFC protein expressionROSMAPDLPFCProteomics596ControlledIn handAtlas v1syn17015098
ROSMAP Mega snRNA-seq expressionROSMAPDLPFCsnRNA-seq—ControlledIn handAtlas v1syn31512863
ROSMAP MIT snRNA-seq expressionROSMAPDLPFCsnRNA-seq427ControlledIn handAtlas v1syn52293417
ROSMAP PCC alternative splicingROSMAPPCCSplicing—ControlledIn handAtlas v1syn3157322
ROSMAP PCC gene expressionROSMAPPCCExpression—ControlledIn handAtlas v1syn3157322
ROSMAP RNA-seq microglia gene expressionROSMAPmicrogliaExpression—ControlledIn handAtlas v1syn2580853
ROSMAP RNA-seq monocyte gene expressionROSMAPmonocyteExpression—ControlledIn handAtlas v1syn22024496
ROSMAP snATAC-seq Chromatin AccessibilityROSMAPDLPFC, 6 cell typessnATAC-seq—ControlledIn handAtlas v1syn69670592
ROSMAP snRNA-seq pseudo-bulk gene expressionROSMAPDLPFC, 7 cell typesExpression—ControlledIn handAtlas v1syn31512863
ROSMAP snRNA-seq Splicing (ISSAC)ROSMAPDLPFC, 7 cell typesSplicing530ControlledIn handAtlas v1syn31512863
ROSMAP WGS dataROSMAPblood, brainGenotype / WGS—ControlledIn handAtlas v1
STARNET genotype dataSTARNETbloodGenotype / WGS—ControlledIn handAtlas v1
STARNET macrophage gene expression QTLSTARNETmacrophageExpression479ControlledIn handAtlas v1syn69670592
MSSM PsychAD snRNA-seqOn the AD Knowledge Portal; 1,494 donors from three brain banks (1,042 MSBB, 300 HBCC, 152 ROSMAP)MSSM PsychADPrefrontal cortex, cell typessnRNA-seq—ControlledIn handNext phasesyn52160016
Other new or expanded datasetsAdd candidates with + Propose a dataset—————To identifyNext phase—
+ Propose a dataset Opens a GitHub issue that asks for cohort, tissue or cell type, modality, sample size, access and Synapse ID. A curator turns it into a page.