This grid shows which xQTL protocol methods have been run on each dataset, including cis-QTL mapping, SuSiE and fSuSiE fine-mapping, ColocBoost colocalization, TWAS, cTWAS, Mendelian randomization (MR), LF2 and scEEMS.
| Dataset | cis-QTL | SuSiE | fSuSiE | ColocBoost | TWAS | cTWAS | MR | LF2 | scEEMS | Done |
|---|---|---|---|---|---|---|---|---|---|---|
| Knight ADRC braineQTL | Done | Done | –No status recorded | –No status recorded | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 3/3 |
| Knight ADRC brainmQTL | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 1/1 |
| Knight ADRC brainpQTL | Done | Done | –No status recorded | –No status recorded | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 3/3 |
| MetaBraineQTL | Done | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 2/2 |
| MiGA microgliaeQTL | Done | Done | –No status recorded | –No status recorded | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 3/3 |
| MSBB brainsQTL | –No status recorded | Done | –No status recorded | –No status recorded | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 2/2 |
| MSBB braineQTL | Done | Done | –No status recorded | –No status recorded | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 3/3 |
| MSBB brainmQTL | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 1/1 |
| MSBB brainpQTL | Done | Done | –No status recorded | –No status recorded | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 3/3 |
| ROSMAP ACsQTL | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 1/1 |
| ROSMAP ACeQTL | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | Done | –No status recorded | –No status recorded | –No status recorded | 2/2 |
| ROSMAP DLPFCeQTL | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | Done | –No status recorded | –No status recorded | –No status recorded | 2/2 |
| ROSMAP DLPFCglycoQTL | Done | Done | –No status recorded | Done | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 4/4 |
| ROSMAP DLPFC H3K9achaQTL | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 1/1 |
| ROSMAP DLPFCmQTL | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 1/1 |
| ROSMAP DLPFCpQTL | Done | Done | –No status recorded | –No status recorded | Done | Done | –No status recorded | –No status recorded | –No status recorded | 4/4 |
| ROSMAP PCCeQTL | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | Done | –No status recorded | –No status recorded | –No status recorded | 2/2 |
| ROSMAP monocyteeQTL | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | Done | –No status recorded | –No status recorded | –No status recorded | 2/2 |
| ROSMAP single-nucleussQTL | –No status recorded | –No status recorded | –No status recorded | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 1/1 |
| ROSMAP single-nucleuscaQTL | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 1/1 |
| ROSMAP snuc-eQTLsnuc-eQTL | Done | Done | –No status recorded | –No status recorded | Done | Done | –No status recorded | –No status recorded | –No status recorded | 4/4 |
| STARNET macrophageeQTL | Done | Done | –No status recorded | –No status recorded | Done | –No status recorded | –No status recorded | –No status recorded | –No status recorded | 3/3 |
| MSSM PsychAD snRNA-seqsnuc-eQTL · next phase | ·Awaiting data | ·Awaiting data | –No status recorded | ·Awaiting data | ·Awaiting data | ·Awaiting data | ·Awaiting data | ?Scope to decide | ·Awaiting data | 0/8 |
Rows are the QTL datasets whose page records analysis status, plus datasets curated for the next phase. "Not yet run" marks a method that applies to data already in hand. cis-QTL is marked done where the dataset's cis top-loci file from single-context fine-mapping is on the AD Knowledge Portal. A dash (–) means no status is recorded for that method, not that it does not apply.