{ "cells": [ { "cell_type": "markdown", "metadata": { "kernel": "SoS" }, "source": [ "# A multivariate EBNM approach for mixture multivariate distribution estimate\n", "\n", "In this notebook, we compute a prior independent of the specific analysis method chosen for the data. This foundational step enables the application of various techniques, such as UDR, ED, TED, and initialization with FLASHier, among others. Essentially, our goal is to establish a mixture model to extract meaningful signals from the data.\n", "\n", "An earlier version of the approach is outlined in Urbut et al 2019. This workflow implements a few improvements including using additional EBMF methods as well as the new `udr` package (latest update: May 2023) to fit the mixture model." ] }, { "cell_type": "code", "execution_count": 1, "metadata": { "kernel": "SoS" }, "outputs": [ { "data": { "text/html": [ "\n", "
Revision | \n", "Author | \n", "Date | \n", "Message | \n", "
---|---|---|---|
75d03af | \n", "Gao Wang | \n", "2023-10-11 | \n", "Improve mash analysis codes |
c35109b | \n", "Gao Wang | \n", "2023-10-11 | \n", "Update mash pipeline |
7203e2b | \n", "Gao Wang | \n", "2023-10-10 | \n", "Update container entrypoint to allow for different conventions to specify containers |
80ec945 | \n", "Gao Wang | \n", "2023-10-10 | \n", "clean up mashr codes |
3b8db47 | \n", "rfeng2023 | \n", "2023-10-09 | \n", "update mash |
3fb13c4 | \n", "rfeng2023 | \n", "2023-05-30 | \n", "update mash |
309e04c | \n", "Gao Wang | \n", "2022-02-07 | \n", "Rename pipeline folder |